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Vietorisz C, Nash J, Leander E, Bock B, Camuy-V茅lez L, Hall AJ, Jaros J, Kuehn K, Lai E, Mounts I, Bacy I, Dagg C, Anderson I, Carnegie A, Powell J, Brewer JS, D鈥橝ntonio C, Hynson N, Vilgalys R, Hoeksema JD. 2025. Pine-fungal co-invasion alters whole-ecosystem properties of a native eucalypt forest. .
Bock B, Hoeksema JD, Johnson NC, Gehring CA. 2025. Evidence for common fungal networks among plants formed by a dark septate endophyte in Sorghum bicolor. .
Chatterjee A, Taylor JM, Read QD, Moore MT, Locke MA, Hoeksema JD. 2025. Different Timing and Duration of Managed Flooding for Migratory Waterbird Habitat has Little Effect on Soil Nutrient Availability and Extracellular Enzyme Activity in the Lower Mississippi River Basin (LMRB), USA. .
Spalazzi MF, Milani T, Hoeksema JD, Nu帽ez MA, Teste FP. 2024. Can invading Pinus species facilitate more invasion in a mountain grassland? .
R煤a MA & Hoeksema JD. 2024. Interspecific selection in a diverse mycorrhizal symbiosis. . https://doi.org/10.1038/s41598-024-62815-4
Jones MD, Hoeksema JD, and Karst J. 2023. Opinion: Where the "Wood-wide Web" narrative went wrong. .
Karst J, Jones MD, Hoeksema JD. 2023. Positive citation bias and overinterpreted results lead to misinformation on common mycorrhizal networks in forests. (PDF). Related webinar by Jason:
Selected media coverage and commentary related to Karst et al. 2023 (): Nature (, ), , , , , , ,, , , , , (1:22 video), (story begins at 11:18), In Defense of Plants podcast (separate interviews with , , and ), podcast, (Canada), (scientific review article in French), (Canada, French), (French), (French), (French), (French), (Portuguese), (5:26 radio clip in German), (6:14 podcast in German), (Italian), (German), (interview by C茅sar Mar铆n and Guillermo Bueno), (4:32 video), , , , , , .
Chatterjee A, Taylor JM, Read QD, Moore M, Locke M, Hoeksema JD. 2023. Shallow water habitat management influences soil CO2 efflux from agricultural fields in the Lower Mississippi River Basin (LMRB), USA. .
Horning A, Koury S, Meachum M, Kuehn K, Hoeksema JD. 2022. Dirt cheap: An experimental test of controls on resource exchange in an ectomycorrhizal symbiosis. .
Policelli N, Hoeksema JD, Moyano J, Vilgalys R, Vivelo S, Bhatnagar J. 2022. Global pine tree invasions are linked to invasive root symbionts. .
Milani T, Hoeksema JD, Jobb谩gy E, Rojas JA, Vilgalys R, Teste F. 2022. Co-invading ectomycorrhizal fungal succession in pine-invaded mountain grasslands. .
Barnett ZC, Adams SB, Hoeksema JD, Easson GL, and Ochs CA. 2022. Effects of impoundments on stream crayfish assemblages. .
Day LB, Helmhout W, Pano G, Olsson U, Hoeksema JD, Lindsay WR. 2021. Correlated evolution of acrobatic display and both neural and somatic phenotypic traits in manakins (Pipridae). .
Cinar O, Umbanhowar J, Hoeksema J D, & Viechtbauer W. 2021. Using information鈥恡heoretic approaches for model selection in meta-analysis. .
Barnett ZC, Ochs CA, Hoeksema JD, Adams SB. 2021. Not all methods are created equal: assessment of sampling methods for crayfishes and fishes in southern Appalachian streams. .
Hoeksema JD, Averill C, Bhatnagar JM, Brzostek E, Buscardo E, Chen K, Liao H, Nagy L, Policelli N, Ridgeway J, Rojas JA, Vilgalys R. 2020. Ectomycorrhizal plant-fungal co-invasions as natural experiments for connecting plant and fungal traits to their ecosystem consequences. .
Barnett ZC, Ochs CA, Hoeksema JD, Adams SB. 2020. Multi-pass electrofishing sampling efficiency for stream crayfish population estimations. .
Lokhandwala A, and Hoeksema JD. 2019. Priming by arbuscular mycorrhizal fungi of plant antioxidant enzyme production: A meta-analysis. . (PDF)
Bueno G, Aldrich-Wolfe L, Chaudhary B, Gerz M, Helgason T, Hoeksema JD, Klironomos J, Lekberg Y, Leon D, Maherali H, 脰pik M, Zobel M, Moora M. 2019. Misdiagnosis and uncritical use of plant mycorrhizal data are not the only elephants in the room: A response to Brundrett & Tedersoo (2019) 鈥楳isdiagnosis of mycorrhizas and inappropriate recycling of data can lead to false conclusions鈥�. . (PDF)
Bennett, A. E., K. Preedy, A. Golubski, J. Umbanhowar, S. R. Borrett, L. Byrne, K. Apostol, J. D. Bever,L. Biederman, A. T. Classen, K. Cuddington, M.-A. de Graaff, K. A. Garrett, L. Gross, A. Hastings, J. D. Hoeksema,V. Hrynkiv, J. Karst, M. Kummel, C. T. Lee, C. Liang, W. Liao, K. Mack, L. Miller, B. Ownley, C. Rojas, E. L. Simms,V. K. Walsh, M. Warren, and J. Zhu. 2019. Beyond the black box: promoting mathematical collaborations for elucidatinginteractions in soil ecology. .
Piculell BJ, Mart铆nez-Garc铆a PJ, Nelson CD, Hoeksema JD. 2019. Association mapping of ectomycorrhizal traits in loblolly pine (Pinus taeda L.).
Epps S, Hoeksema JD. 2018. Establishment and Spread of the Scaly-breasted Munia (Lonchura punctulata) in Mississippi. The Mississippi Kite 48(2):47-55. (PDF)
Piculell BJ, Eckhardt LG, Hoeksema JD. 2018. Genetically determined fungal pathogen tolerance and soil variation influence ectomycorrhizal traits of loblolly pine. .
Rasmussen AL, Brewer JS, Jackson CR, Hoeksema JD. 2018. Tree thinning and fire affect ectomycorrhizal fungal communities and enzyme activities. .
Hoeksema JD, Bever JD, Chakraborty S, Chaudhary VB, Gardes M, Gehring CA, Hart MM, Housworth EA, Kaonongbua W, Klironomos JN, Lajeunesse MJ, Meadow J, Milligan BG, Piculell B, Pringle A, R煤a MA, Umbanhowar J, Viechtbauer W, Wang Y-W, Wilson GWT, Zee PC. 2018. Evolutionary history of plant hosts and fungal symbionts predicts the strength of mycorrhizal mutualism. . Associated data and R code for conducting phylogenetic meta-analysis can be . A "Behind the paper" blog post outlining the history of the collaboration that led to this paper can be found on the .
Karst J, Burns C, Cale J, Antunes P, Woods M, Lamit L, Hoeksema JD, Zabinski C, Gehring C, La Fleche M, Rua M. 2018. Tree species with limited geographic ranges show extreme responses to ectomycorrhizas. . (PDF)
Hoeksema JD, Roy M, 艁aska G, Sienkiewicz A, Horning A, Abbott MJ, Tran C, Mattox J. 2018. Pulsatilla patens (Ranunculaceae), a perennial herb, is ectomycorrhizal in northeastern Poland and likely shares ectomycorrhizal fungi with Pinus sylvestris. . (PDF)
Lionheart G, Vandenbrink JP, Hoeksema JD, Kiss JZ. 2018. The impact of simulated microgravity on the growth of different genotypes of the model plant Medicago truncatula. . (PDF)
Rasmussen AL, Busby RR, Hoeksema JD. 2018. Host preference of ectomycorrhizal fungi in mixed pine-oak woodlands. . (PDF)
R煤a MA, Lamit LJ, Gehring C, Antunes PM, Hoeksema JD, Zabinski C, Karst J, Burns C, Woods M. 2018. Accounting for local adaptation in ectomycorrhizas: A call to track geographical origin of plants, fungi, and soils in experiments. . (PDF)
Trautwig A, Carter E, Hoeksema JD, Nadel R, Lowenstein N, Eckhardt L. 2017. Cogongrass (Imperata cylindrica) affects above and belowground processes in commercial loblolly pine (Pinus taeda) stands. . (PDF)
Yang H, Zhang Q, Koide R, Hoeksema JD, Tang J, Bian X, Hu S, Chen X. 2017. Taxonomic resolution is a determinant of biodiversity effects in arbuscular mycorrhizal fungal communities. . (PDF)
Craig AJ, Woods S, Hoeksema JD. 2016. Influences of host plant identity and disturbance on spatial structure and community composition of ectomycorrhizal fungi in a northern Mississippi uplands ecosystem. . (PDF)
R煤a MA, Antonika A, Anunes PM, Chaudhary VB, Gehring C, Lamit LJ, Piculell BJ, Bever JD, Zabinski C, Meadow JF, Lajeunesse MJ, Milligan BG, Karst J, Hoeksema JD. 2016. Home field advantage? Evidence of local adaptation among plants, soil, and arbuscular mycorrhizal fungi through meta-analysis. . (Open Access; DOI: 10.1186/s12862-016-0698-9)
V. Bala Chaudhary, Megan A. R煤a, Anita Antoninka, James D. Bever, Jeffery Cannon, Ashley Craig, Jessica Duchicela, Alicia Frame, Monique Gardes, Catherine Gehring, Michelle Ha, Miranda Hart, Jacob Hopkins, Baoming Ji, Nancy Collins Johnson, Wittaya Kaonongbua, Justine Karst, Roger Koide, Louis J. Lamit, James Meadow, Brook G. Milligan, John C. Moore, Thomas H. Pendergast, Bridget Piculell, Blake Ramsby, Suzanne Simard, Shubha Shrestha, James Umbanhowar, Wolfgang Viechtbauer, Lawrence Walters, Gail Wilson, Peter C. Zee, and Jason D. Hoeksema. 2016. MycoDB, a global database of plant response to mycorrhizal fungi. . (DOI:10.1038/sdata.2016.28)
R煤a MA, Wilson EC, Steele S, Munters AR, Hoeksema JD, Frank C. 2016. Associations between ectomycorrhizal fungi and bacterial needle endophytes in Pinus radiata: Implications for biotic selection of microbial communities. . (DOI: 10.3389/fmicb.2016.00399)
Emily I. Jones, Maren L. Friesen, Michelle E. Afkhami, Erol Akcay, Judith L. Bronstein, Redouan Bshary, Megan E. Frederickson, Katy D. Heath, Jason D. Hoeksema, Joshua H. Ness, Sabrina Pankey, Stephanie S. Porter, Joel L. Sachs, Klara Charnagl. 2015. Cheaters must prosper: reconciling theoretical and empirical perspectives on cheating in mutualism. (Open Access; DOI: 10.1111/ele.12507) **Cover article:
R煤a MA, Moore B, Hergott N, Van L, Jackson CR, and Hoeksema JD. 2015. Ectomycorrhizal fungal communities and enzymatic activities vary across an ecotone between a forest and field. (DOI: 10.3390/jof1020185)
Hoeksema, J.D. 2015. Experimentally testing effects of mycorrhizal networks on plant ecology and distinguishing among mechanisms. In: Mycorrhizal Networks, edited by T.R. Horton. Springer, Ecological Studies 224. DOI: 10.1007/978-94-017-7395-9_9. Download PDF of Chapter 9, or, or .
Hoeksema J.D. and E.M. Bruna. 2015. Context-dependent outcomes of mutualistic interactions. In: Mutualisms, edited by Judith Bronstein. Oxford University Press. or use promo code on this flier to purchase book at a discount from Oxford University Press.
Karst J, Piculell BJ, Brigham CA, Booth MG, and Hoeksema JD. 2013. Fungal communities in soils along a vegetative ecotone. (DOI:10.3852/12-042). **For a SCULPTURAL TRANSLATION of this paper by artist Kristin Serafini, see .
Hoeksema JD, Hernandez JV, Rogers DR, Mendoza LL, and Thompson JN. 2012. Geographic divergence in a species-rich symbiosis: Interactions between Monterey pines and ectomycorrhizal fungi. (DOI:10.1890/11-1715.1)
Hoeksema JD and Classen AT. 2012. Is plant genetic control of ectomycorrhizal community composition an untapped source of stable soil carbon in managed forests? (DOI:10.1007/s11104-012-1201-z)
贬辞别办蝉别尘补听闯顿.听2012.听Geographic Mosaics of Coevolution.听
Karst J, Hoeksema JD, Jones MD, and Turkington R. 2011. Parsing the roles of abiotic and biotic factors in Douglas-fir seedling growth. . (DOI:10.1016/j.pedobi.2011.05.002)
Hoeksema JD. 2010.听Tansley review. Ongoing coevolution in mycorrhizal interactions. 听. (DOI: 10.1111/j.1469-8137.2010.03305.x)
Hoeksema JD, Chaudhary VB, Gehring CA, Johnson NC, Karst J, Koide RT, Pringle A, Zabinski C, Bever JD, Moore JC, Wilson GWT, Klironomos JN, and Umbanhowar J.听 2010. A meta-analysis of context-dependency in plant response to inoculation with mycorrhizal fungi.听听 . (DOI: 10.1111/j.1461-0248.2009.01430.x)
Booth MG and Hoeksema JD (both authors contributed equally). 2010. Mycorrhizal networks counteract competitive effects of canopy trees on seedling survival. . (DOI: 10.1890/09-1139.1)
Hoeksema JD. 2010. Peering belowground with increasing clarity: Elucidating belowground processes with cutting-edge tools. . (DOI: 10.1007/s11104-010-0298-1)
Chaudhary B, Walters L, Bever JD, Hoeksema JD, Wilson GWT. 2010. Advancing synthetic ecology: A database system to facilitate complex ecological meta-analyses. (DOI: 10.1890/0012-9623-91.2.235)
Hoeksema JD. 2010. Context-dependency rules the day in the grass-endophyte symbiosis. (A review of 鈥淓cology and Evolution of the Grass-Endophyte Symbiosis鈥� by Gregory P. Cheplick and Stanley H. Faeth, 2009, Oxford University Press). (DOI: 10.1111/j.1558-5646.2009.00855.x)
Hoeksema JD, Piculell BJ and Thompson JN. 2009. Within-population genetic variability in mycorrhizal interactions.听 .
Johnson NC, VB Chaudhary, JD Hoeksema, JN Moore, A Pringle, JA Umbanhowar, GT Wilson. 2009. Mysterious mycorrhizae? A field trip and classroom experiment to demystify the symbioses formed between plants and fungi. .
Piculell BJ, JD Hoeksema, and JN Thompson. 2008. Interactions of biotic and abiotic environmental factors on an ectomycorrhizal symbiosis, and the potential for selection mosaics. (11 pages). (also see commentary by David Nash in the )
Hoeksema JD and SE Forde. 2008. A meta-analysis of factors affecting local adaptation between interacting species. . (DOI: 10.1086/527496)
Hoeksema JD and JN Thompson. 2007. Evolved geographic structure in a widespread plant-ectomycorrhizal interaction: Pines and false truffles. . (DOI: 10.1111/j.1420-9101.2006.01287.x)
Johnson NC, JD Hoeksema, JA Umbanhowar, J Bever, VB Chaudhary, CA Gehring, JN Klironomos, R Koide, J Moore, M Miller, P Moutoglis, MW Schwartz, S Simard, W Swenson, GW Wilson, and C Zabinski. 2006. From Lilliput to Brobdingnag: Extending models of mycorrhizal function across scales. .
Schwartz MW, JD Hoeksema, CA Gehring, NC Johnson, JN Klironomos, LK Abbott, and A Pringle. 2006. Global movement of mycorrhizal fungus inoculum: promise and possible consequences. . (DOI: 10.1111/j.1461-0248.2006.00910.x)
Hoeksema JD. 2005. Plant-plant interactions vary with different mycorrhizal fungi. . (DOI: 10.1098/rsbl.2005.0381)
Hoeksema JD and M Kummel. 2003. Ecological persistence of the plant-mycorrhizal mutualism: a hypothesis from species coexistence theory. . (DOI: 10.1086/378644)
Hoeksema JD and MW Schwartz. 2003. Expanding comparative-advantage biological market models: contingency of mutualism on partners鈥� resource requirements and acquisition trade-offs. . (DOI: 10.1098/rspb.2002.2312)
Rudgers, JA and JD Hoeksema. 2003. Interannual variation in the relative importance of herbivory for the annual legume, Lupinus nanus. .
Hoeksema JD and MW Schwartz. 2001. Modeling interspecific mutualisms as biological markets. Pages 173-183 in: R Noe, JARAM Van Hooff, and P Hammerstein (eds.), Economics in Nature. Cambridge University Press, Cambridge, UK. (PDF) ()
Hoeksema JD and EM Bruna. 2000. Pursuing the big questions about interspecific mutualism: a review of theoretical approaches. . (DOI: 10.1007/s004420000496)
Hoeksema JD, J Lussenhop and J Teeri. 2000. Soil nematodes indicate food web responses to elevated atmospheric CO2. .
Schwartz, MW, CA Brigham, JD Hoeksema, KG Lyons, MH Mills and PJ van Mantgem. 2000. Linking biodiversity to ecosystem function: implications for conservation ecology. .
Hoeksema JD. 1999. Investigating the disparity in host-specificity between AM and EM fungi: lessons from theory and better-studied systems. Oikos 84:327-332. (PDF)
Brigham CA and JD Hoeksema. 1999. Spatial processes in ecology鈥攁 review of Spatial Ecology, D Tilman and P Kareiva, editors. Madro帽o 46(4):218-219.
Schwartz MW and JD Hoeksema. 1998. Specialization and resource trade: biological markets as a model of mutualisms. . (also see commentary in Science News)